1.1.1.2.1.2. molpher.algorithms.bidirectional package¶
1.1.1.2.1.2.1. Submodules¶
1.1.1.2.1.2.2. molpher.algorithms.bidirectional.pathfinder module¶
- class molpher.algorithms.bidirectional.pathfinder.BidirectionalPathFinder(settings)[source]¶
Bases:
object
- Parameters
settings (
Settings
) – search settings
Implements a search where two trees are used to explore against each other. After every iteration the targets of the trees are updated so that the closest molecule from one tree becomes a target in the other.
This search might be quicker and the morphs on the resulting paths are more balanced in terms of similarity to both source and the target.
- __call__()[source]¶
Execute the search and return the path.
- Returns
a list of SMILES strings representing the found path (defaults to an empty
list
)
- __dict__ = mappingproxy({'__module__': 'molpher.algorithms.bidirectional.pathfinder', '__doc__': '\n :param settings: search settings\n :type settings: `Settings`\n\n Implements a search where two trees are used to explore against each other.\n After every iteration the targets of the trees are updated so that the closest molecule\n from one tree becomes a target in the other.\n\n This search might be quicker and the morphs on the resulting paths are more balanced\n in terms of similarity to both source and the target.\n ', '__init__': <function BidirectionalPathFinder.__init__>, '__call__': <function BidirectionalPathFinder.__call__>, '__dict__': <attribute '__dict__' of 'BidirectionalPathFinder' objects>, '__weakref__': <attribute '__weakref__' of 'BidirectionalPathFinder' objects>, '__annotations__': {}})¶
- __module__ = 'molpher.algorithms.bidirectional.pathfinder'¶
- __weakref__¶
list of weak references to the object (if defined)
- source_target¶
ExplorationTree
from source to target
- source_target_min¶
FindClosest
holding the current minimum in the ‘source to target’ tree.
- target_source¶
ExplorationTree
from target to source
- target_source_min¶
FindClosest
holding the current minimum in the ‘target to source’ tree.